ANTs

ANTs ( Advanced Normalization Tools) extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data.

ANTs jobscript example

#!/bin/bash
#SBATCH --job-name=test_ants
#SBATCH --output=test_ants-%j.log
#SBATCH --partition=tue.default.q
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=4
#SBATCH --mem-per-cpu=2gb
#SBATCH --time=00:05:00

module purge
module load ANTs/2.5.1-foss-2023a

cd $HOME/Jobs/ANTs

antsRegistrationSyNQuick.sh -d 2 -f data/r16slice.jpg -m data/r64slice.jpg -t r -o ./output/rigid