Python software modules
Python and related software.
| Name | Supported Versions | Module(s) | https://hpc.tue.nl |
|---|---|---|---|
| AlphaFold | 2.3.1-foss-2022a | ml avail AlphFold | |
| Cantera | 3.0.0-foss-2023a2.6.0-foss-2022a | ml avail Cantera | |
| CuPy | 13.0.0-foss-2023a-CUDA-12.1.1 | ml avail CuPy. | |
| IPython | 9.3.0-GCCcore-14.2.08.28.0-GCCcore-13.3.0 | ml avail IPython | |
| Jax | 0.7.0-gfbf-2025a0.4.25-gfbf-2023a-CUDA-12.1.1 | ml avail jax | |
| JupyterLab | 4.4.4-GCCcore-14.2.04.2.5-GCCcore-13.3.0 | ml avail Jupyter | Yes |
| LightGBM | 4.6.0-foss-2024a4.5.0-foss-2023a-CUDA-12.1.1 | ml avail LightGBM | |
| MLflow | 2.10.2-gfbf-2023a | ml avail MLflow | Yes |
| numba | 0.62.0-foss-2025a0.60.0-foss-2024a | ml avail numba | |
| OpenCV | 4.11.0-foss-2024a-contrib4.8.1-foss-2023a-CUDA-12.1.1-contrib | ml avail OpenCV | |
| OpenFold | 2.0.0-foss-2023a-CUDA-12.1.11.0.1-foss-2022a-CUDA-11.7.0 | ml av OpenFold | |
| OpenMM | 8.3.0-foss-2025a8.0.0-foss-2023a-CUDA-12.1.1 | ml avail OpenMM | |
| Optuna | 4.1.0-foss-2024a3.5.0-foss-2023a | ml avail Optuna | |
| petsc4py | 3.20.3-foss-2023a3.17.4-foss-2022a | ml avail petsc4py | |
| Python | 3.13.1-GCCcore-14.2.03.12.3-GCCcore-13.3.03.11.3-GCCcore-12.3.03.10.13-GCCcore-11.3.0 | ml avail Python/ | |
| PyTorch | 2.1.2-foss-2023a2.1.2-foss-2023a-CUDA-12.1.1 | ml avail PyTorch | Yes |
| PyTorch-Lightning | 2.2.1-foss-2023a2.2.1-foss-2023a-CUDA-12.1.11.8.4-foss-2022a1.8.4-foss-2022a-CUDA-11.7.0 | ml avail PyTorch | |
| RHEIA | 1.1.13-foss-2024a1.1.11-foss-2023a | ml avail RHEIA | |
| scikit-bio | 0.6.0-foss-2023a0.5.7-foss-2022a | ml avail scikit-bio | |
| scikit-learn | 1.7.0-gfbf-2025a1.5.2-gfbf-2024a | ml avail scikit-learn | |
| scikit-image | 0.25.0-foss-2024a0.22.0-foss-2023a | ml avail scikit-image | |
| SciPy | 2025.06-gfbf-2025a2024.05-gfbf-2024a | ml avail SciPy-bundle | Yes |
| SHAP | 0.43.0-foss-2023a | ml avail SHAP | |
| slepc4py | 3.20.2-foss-2023a3.17.2-foss-2022a | ml avail slepc4py | |
| Transformers | 4.55.0-gfbf-2024a4.39.3-gfbf-2023a | ml avail Transformers | |
| Tensorflow | 2.15.1-foss-2023a2.15.1-foss-2023a-CUDA-12.1.12.11.0-foss-2022a2.11.0-foss-2022a-CUDA-11.7.0 | ml avail TensorFlow | Yes |
| torchvision | 0.16.0-foss-2023a0.16.0-foss-2023a-CUDA-12.1.10.13.1-foss-2022a0.13.1-foss-2022a-CUDA-11.7.0 | ml avail torchvision | Yes |
| XGBoost | 2.1.3-gfbf-2023a2.1.3-gfbf-2023a-CUDA-12.1.1 | ml avail XGBoost |
available pip packages after running module load SciPy-bundle/2025.06-gfbf-2025a
$ module load SciPy-bundle/2023.07-gfbf-2023a
$ pip list
Package Version
--------------------------------- -----------
alabaster 1.0.0
appdirs 1.4.4
asn1crypto 1.5.1
atomicwrites 1.4.1
attrs 25.3.0
babel 2.17.0
backports.entry_points_selectable 1.3.0
backports.functools_lru_cache 2.0.0
beniget 0.4.2.post1
bitarray 3.3.1
bitstring 4.3.1
Bottleneck 1.5.0
CacheControl 0.14.2
cachy 0.3.0
certifi 2025.4.26
cffi 1.17.1
chardet 5.2.0
charset-normalizer 3.4.1
cleo 2.1.0
click 8.1.8
cloudpickle 3.1.1
colorama 0.4.6
commonmark 0.9.1
crashtest 0.4.1
cryptography 44.0.2
deap 1.4.3
decorator 5.2.1
distlib 0.3.9
distro 1.9.0
docopt 0.6.2
docutils 0.21.2
doit 0.36.0
dulwich 0.22.8
ecdsa 0.19.1
editables 0.5
exceptiongroup 1.2.2
execnet 2.1.1
filelock 3.18.0
flit_core 3.10.1
fsspec 2025.3.2
future 1.0.0
gast 0.6.0
glob2 0.7
html5lib 1.1
idna 3.10
imagesize 1.4.1
importlib_metadata 8.7.0
importlib_resources 6.5.2
iniconfig 2.1.0
intervaltree 3.1.0
intreehooks 1.0
ipaddress 1.0.23
jaraco.classes 3.4.0
jaraco.context 6.0.1
jaraco.functools 4.1.0
jeepney 0.9.0
Jinja2 3.1.6
joblib 1.4.2
jsonschema 4.23.0
jsonschema-specifications 2025.4.1
keyring 25.6.0
keyrings.alt 5.0.2
liac-arff 2.5.0
lockfile 0.12.2
markdown-it-py 3.0.0
MarkupSafe 3.0.2
mdurl 0.1.2
mock 5.2.0
more-itertools 10.7.0
mpmath 1.3.0
msgpack 1.1.0
netaddr 1.3.0
netifaces 0.11.0
numexpr 2.11.0
numpy 2.3.1
packaging 24.2
pandas 2.3.0
pastel 0.2.1
pathlib2 2.3.7.post1
pathspec 0.12.1
pbr 6.1.1
pexpect 4.9.0
pip 24.3.1
pkginfo 1.12.1.2
platformdirs 4.3.7
pluggy 1.5.0
ply 3.11
pooch 1.8.2
psutil 7.0.0
ptyprocess 0.7.0
py 1.11.0
py_expression_eval 0.3.14
pyasn1 0.6.1
pycparser 2.22
pycryptodome 3.22.0
pydevtool 0.3.0
Pygments 2.19.1
pylev 1.4.0
PyNaCl 1.5.0
pyparsing 3.2.3
pyrsistent 0.20.0
pytest 8.3.5
pytest-xdist 3.6.1
python-dateutil 2.9.0.post0
pythran 0.18.0
pytoml 0.1.21
pytz 2025.2
RapidFuzz 3.13.0
referencing 0.36.2
regex 2024.11.6
requests 2.32.3
requests-toolbelt 1.0.0
rich 14.0.0
rich-click 1.8.8
roman-numerals-py 3.1.0
rpds-py 0.24.0
scandir 1.10.0
scipy 1.16.0
SecretStorage 3.3.3
semantic_version 2.10.0
setuptools 75.6.0
setuptools-scm 8.1.0
shellingham 1.5.4
simplegeneric 0.8.1
simplejson 3.20.1
six 1.17.0
snowballstemmer 2.2.0
sortedcontainers 2.4.0
Sphinx 8.2.3
sphinx-bootstrap-theme 0.8.1
sphinxcontrib-applehelp 2.0.0
sphinxcontrib-devhelp 2.0.0
sphinxcontrib-htmlhelp 2.1.0
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 2.0.0
sphinxcontrib-serializinghtml 2.0.0
sphinxcontrib-websupport 2.0.0
tabulate 0.9.0
threadpoolctl 3.6.0
toml 0.10.2
tomli 2.2.1
tomli_w 1.2.0
tomlkit 0.13.2
typing_extensions 4.12.2
tzdata 2025.2
ujson 5.10.0
urllib3 2.4.0
versioneer 0.29
virtualenv 20.29.2
wcwidth 0.2.13
webencodings 0.5.1
wheel 0.45.1
xlrd 2.0.1
zipfile36 0.1.3
zipp 3.21.0